forthcoming articles

The following articles are a selection of those recently accepted for publication in IUCr journals.

Journal logoActa Crystallographica Section A
Acta Crystallographica
Section A
FOUNDATIONS AND ADVANCES
Accepted 11 November 2024

A computationally efficient quasi-harmonic study of ice polymorphs using the FFLUX force field

The next-generation machine-learning force field FFLUX is applied to ice polymorphs Ih, II and XV. Under the quasi-harmonic approximation, Gibbs free energies are calculated using FFLUX at a significantly reduced computational cost compared with the commonly used density functional theory methods. However, the parametrized non-bonded potentials impede the accuracy of the model, leading to large errors in the free energies calculated.

Accepted 6 November 2024

Growth functions of periodic space tessellations

For any periodic tilings of the plane by congruent polygons, growth functions are derived that count the numbers of vertices, edges and faces as the coverage expands. The functions are computed as polynomial formulas in a Python program and analyzed graphically using orphic diagrams.
Journal logoActa Crystallographica Section B
Acta Crystallographica
Section B
STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS

Accepted 8 November 2024

Crystal structure predictions for molecules with soft degrees of freedom using intermonomer force fields derived from first principles


Accepted 30 October 2024

Selective acceleration and inhibition of crystal growth of glass carbamazepine by low-concentration poly(ethylene oxide):effects of drug polymorph

Low-concentration poly(ethylene oxide) exhibit the polymorph-dependent effects on both the surface and bulk crystal growth of carbamazepine polymorphs. These polymorph-dependent effects of PEO were mainly attributed to the polymer enrichment at the interface and different crystal surface-polymer interactions.

Accepted 30 October 2024

Density functional theory investigation of the phase transition, elastic and thermal characteristics for AuMTe2(M = Ga, In) chalcopyrite compounds

The first theoretical predictions of the phase transitions, elastic properties and thermal behavior of AuMTe2 (M = Ga, In) chalcopyrite compounds are presented. Using density functional theory and the quasi-harmonic Debye model, key mechanical and thermodynamic properties are analyzed, offering insights valuable for future experimental validation.

Accepted 22 October 2024

Variable stoichiometry and salt–cocrystal intermediate in the multicomponents of flucytosine: structural elucidation and its impact on stability


Accepted 14 October 2024

Polymorphism of Pb5(PO4)3OHδ within the LK-99 mixture

A new orthorhombic crystal Pb5(PO4)3OHδ of space-group symmetry Pnma significantly differs differing from the hexagonal apatite phases of Pb10(PO4)6O and Pb5(PO4)3OH.

Accepted 12 October 2024

Co-crystal structure prediction of N-halide phthalimides with 3,5-di­methyl­pyridine

It is shown that the evolutionary algorithm USPEX can successfully predict stable stoichiometries of co-crystals and how synthon analysis helps to aid crystal structure prediction by identifying the likeliest structures.

Accepted 12 October 2024

Conformational disorder in quercetin dihydrate revealed from ultrahigh-resolution synchrotron diffraction

The charge-density distribution at ultrahigh resolution of quercetin dihydrate crystal reveals a subtle disorder in the catechol ring system. The electrostatic complementarity between the quercetin molecule and its surroundings is good with the water molecules, but less so in the aromatic stacking region.

Accepted 10 October 2024

Coordination geometry flexibility driving supramolecular isomerism of Cu/Mo pillared-layer hybrid networks

The hydro­thermal synthesis and structural characterization of four novel 3D pillared-layer metal–organic frameworks are studied, revealing how the malleability of copper coordination geometries drives diverse supramolecular isomerism. The findings provide new insights into designing advanced hybrid materials with tailored properties, emphasizing the significant role of reaction conditions and metal ion flexibility in determining network topologies.

Accepted 8 October 2024

Structures of hexa­methyl-[1,1′-bi­phenyl]-4,4′-di­ammonium salts

The structures of nine hexa­methyl-[1,1′-bi­phenyl]-4,4′-di­ammonium (HMB) salts are described

Accepted 8 October 2024

Review of honeycomb-based Kitaev materials with zigzag magnetic ordering


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Journal logoActa Crystallographica Section C
Acta Crystallographica
Section C
STRUCTURAL CHEMISTRY

Accepted 15 November 2024

How to use DIALS to process chemical crystallography 3D ED rotation data from pixel array detectors

Three examples of data processing of chemical crystallography 3D ED rotation data using the DIALS package are presented. These examples are taken from a standard transmission electron microscope, and from two commercial instruments, each equipped with a low-noise pixel array detector optimized for diffraction studies.

Accepted 14 November 2024

Construction of pyridine-functionalized metal–organic frameworks for the detection of flaza­sulfuron

The photophysical properties of two novel Cu-based metal–organic frameworks (MOFs) were investigated by fluorescence spectroscopy. One of the MOFs shows an obvious `turn-on' fluorescence enhancement effect towards flaza­sulfuron and the potential application for sensing flaza­sulfuron in water with high selectivity and sensitivity was also investigated in detail.
Journal logoActa Crystallographica Section D
Acta Crystallographica
Section D
STRUCTURAL BIOLOGY
Journal logoActa Crystallographica Section E
Acta Crystallographica
Section E
CRYSTALLOGRAPHIC COMMUNICATIONS

Accepted 19 November 2024

Crystal structure and Hirshfeld surface analysis of (2,7-di­eth­oxy­naphthalene-1,8-di­yl)bis­[(4-bromophen­yl)methanone]

In the title compound, the two 4-bromo­benzoyl groups are attached in a non-coplanar fashion to the naphthalene ring system and are oriented in opposite directions.

Accepted 19 November 2024

Syntheses and crystal structures of the imides 4-(2-phenyl­eth­yl)- and 4-[2-(4-hy­droxy­phen­yl)eth­yl]-4-aza­tetra­cyclo­[5.3.2.02,6.08,10]dodec-11-ene-3,5-dione

The crystal structures of the title compounds feature C—H⋯π inter­actions as well as O—H⋯O and C—H⋯O hydrogen bonds.

Accepted 12 November 2024

Intra- and inter­molecular C—H⋯F hydrogen bonds in the crystal structure of 1,2-bis­[2-(2,3,4,5-tetra­fluoro­phen­yl)ethyn­yl]benzene

The structure of the aryl ethynylene mol­ecule, 1,2-bis-(2,3,4,5-tetra­fluoro­phenyl­ethyn­yl) benzene includes two unique mol­ecules in the unit cell. Both feature intra­molecular sp2-C—H⋯F hydrogen bonds in addition to inter­molecular C—H⋯F hydrogen bonds.

Accepted 12 November 2024

Crystal structure of the 1:1 cocrystal 5,5′-(triaz-1-ene-1,3-di­yl)bis­(3-nitro-1H-1,2,4-triazole)–tri­ethylammonium nitrate

The tri­ethyl­ammonium nitrate cocrystal of 5,5′-(triaz-1-ene-1,3-di­yl)bis­(3-nitro-1H-1,2,4-triazole), obtained unintentionally from 3-amino-5-nitro-1,2,4-triazole (ANTA), exhibits extensive hydrogen bonding and modulation by pseudo-translation with Z* = 4.

Accepted 7 November 2024

Crystal structure, Hirshfeld surface, DFT and mol­ecular docking studies of 2-{4-[(E)-(4-acetylphen­yl)diazen­yl]phen­yl}-1-(5-bromo­thio­phen-2-yl)ethanon,; a compound with bromine⋯oxygen-type contacts

The crystal structure of the title non-liquid crystal compound is consolidated by C—Br⋯O=C type contacts running continuously along the [001] direction.
Journal logoActa Crystallographica Section F
Acta Crystallographica
Section F
STRUCTURAL BIOLOGY COMMUNICATIONS

Accepted 20 November 2024

Revisiting sodium phosphotungstate and ammonium molybdate as nonradioactive negative-staining agents for single-particle analysis

The most often used negative stains for single-particle analysis are based on the radioactive element uranium. Here, two stains based on tungsten or molybdenum are re-established as nonradioactive substitutes to allow a broader user base to use negative-staining electron microscopy in structural biology projects.

Accepted 19 November 2024

Crystal structure of a short-chain de­hydrogenase from Burkholderia cenocepacia J2315 in complex with NADP+ and benzoic acid

The structure of the Burkholderia cenocepacia short-chain dehydrogenase/reductase (SDR) in complex with NADP+ and benzoic acid is presented. Analysis of the structure reveals a distinctive active-site architecture, suggesting that this protein is part of the divergent SDR subgroup.

Accepted 14 November 2024

Crystal structure of glutamyl-tRNA synthetase from Helicobacter pylori

Persistent H. pylori infection causes gastric ulcers and cancer, and multidrug resistance is increasing globally. The 2.5 Å resolution structure of H. pylori glutamyl-tRNA synthetase was determined as a first step towards rational drug discovery.

Accepted 14 November 2024

Structures of Trichomonas vaginalis macrophage migratory inhibitory factor

The production, crystallization and three crystal structures of macrophage migratory inhibitory factor from T. vaginalis are reported.
Journal logoJournal of Applied Crystallography Journal of Applied
Crystallography

Accepted 7 November 2024

Residual stress depth profiling based on a triaxial stress model: the principal stress gradients in magnetron sputtered molybdenum films

Depth-dependent investigation of the principal stress gradients in a sputtered coating applying asymmetric diffraction and different data evaluation routines.

Accepted 2 November 2024

Intensity corrections for grazing-incidence X-ray diffraction of thin films using static area detectors

Intensity correction factors for grazing incidence X-ray diffraction are derived theoretically and applied to experimental data of thin film samples with different textures. The provided corrections promise improved quality of crystal structure solutions from thin films and allow quantitative texture and phase analysis.

Accepted 1 November 2024

Effect of thickness and noise on angular correlation analysis from scanning electron nanobeam diffraction of disordered carbon

The impact of sample thickness and experimental noise on angular correlation analysis from scanning electron nanobeam diffraction patterns of disordered carbon are investigated and analyzed regarding the interpretability of the analysis results.

Accepted 1 November 2024

High-accuracy high-resolution measurements of fluorescence in manganese using extended-range high-energy-resolution fluorescence detection

By applying the new technique of extended-range high-energy-resolution fluorescence detection (XR-HERFD), developed from high-resolution resonant inelastic X-ray scattering and HERFD, the analysis of data from all three techniques is explained to discover new physical processes in matter, with solid manganese as an example.

Accepted 30 October 2024

Specific radiation damage to halogenated inhibitors and ligands in protein–ligand crystal structures

This article reports an investigation into the effects of specific radiation damage to halogenated ligands in crystal structures of protein–inhibitor complexes.

Accepted 24 October 2024

GRASP Integrated 3D Plotter: GRIP

This article describes the implementation of GRIP as a module of GRASP, enabling the fully three-dimensional visualization and analysis of data collected on small-angle neutron scattering instruments.

Accepted 23 October 2024

Multimodal reconstruction of TbCo thin-film structure with Bayesian analysis of polarized neutron reflectivity

For the first time, a multimodal reconstruction of a magnetic thin-film structure has been found using polarised neutron reflectivity. This has been achieved by implementing the Bayesian approach in combination with error correction based on the maximum likelihood method and instrument function optimization.

Accepted 21 October 2024

TOMOMAN: a software package for large-scale cryo-electron tomography data preprocessing, community data sharing and collaborative computing

Here we describe TOMOMAN (TOMOgram MANager), an extensible open-sourced software package for handling cryo-electron tomography data preprocessing. TOMOMAN streamlines interoperability between a wide range of external packages and provides tools for project sharing and archival.

Accepted 20 October 2024

Advanced EXAFS analysis techniques applied to the L-edges of the lanthanide oxides

The L-edge extended X-ray absorption fine structure (EXAFS) spectra of the entire set of lanthanide oxides were collected and modeled, taking into consideration the aggregation of inequivalent absorbing sites, geometric parameterization of the crystal lattice and multielectron excitation removal.

Accepted 19 October 2024

Optimal operation guidelines for direct recovery of high-purity precursor from spent lithium-ion batteries: hybrid operation model of population balance equation and data-driven classifier

This study proposes an operation optimization framework for impurity-free recycling of spent lithium-ion batteries. Using a hybrid population balance equation integrated with a data-driven condition classifier, the study firstly identifies the optimal batch and semi-batch operation conditions that significantly reduce the operation time with 100% purity of product; detailed guidelines are given for industrial applications.

more ...
Journal logoJournal of Synchrotron Radiation Journal of
Synchrotron Radiation

Accepted 4 November 2024

Enhancing the efficiency of a wavelength-dispersive spectrometer based upon a slitless design using a single-bounce monocapillary

A slit-less wavelength-dispersive spectrometer design using a single-bounce monocapillary that aligns the sample on the Rowland circle, enhancing photon throughput and maintaining resolution. The compact design supports flexibility and reconfiguration in facilities without complex beamline infrastructure, significantly improving detection efficiency.

Accepted 4 November 2024

Comparative study of crystallization kinetics and phase segregation of triple cation and methyl­ammonium lead iodide perovskites on moisture probing using synchrotron X-ray based radiation

Synchrotron techniques have been used in the analysis of crystal structure and compositions of materials, in particular for analyzing the crystallization kinetics and phase segregation of perovskite solar films on humidity probing.

Accepted 2 November 2024

Cylindrically bent Laue analyzer in an X-ray Raman/emission spectrometer: performance tests and a comparison with spherically bent Bragg analyzers

The performances of a spherically bent Bragg analyzer and a cylindrically bent Laue analyzer in an X-ray Raman/emission spectrometer are compared.

Accepted 2 November 2024

SiC free-standing membrane for X-ray intensity monitoring in synchrotron radiation beamlines

Characterization of an SiC free-standing membrane to be used as an X-ray beam intensity monitor.

Accepted 1 November 2024

High-resolution imaging of organic and inorganic nanoparticles at nanometre-scale resolution by X-ray ensemble diffraction microscopy

X-ray ensemble diffraction microscopy (XEDM) is an approach to enhance the signal-to-noise ratio in high-frequency regions of scattering. This article presents direct imaging of 55 nm core–shell silica–gold nanoparticles at a 6.8 nm resolution and 19 nm nodavirus-like-particles in solution at a 2.6 nm resolution to demonstrate the high spatial resolution that is difficult to achieve by conventional coherent diffraction microscopy.

Accepted 18 October 2024

Development and testing of a dual-frequency real-time hardware feedback system for the hard X-ray nanoprobe beamline of the SSRF

We introduce a novel approach for a real-time dual-frequency feedback system which has been firstly used at the hard X-ray nanoprobe beamline of Shanghai Synchrotron Radiation Facility. It can efficiently stabilize the X-ray beam position and stability in parallel, making use of different optical systems in the beamline.

Accepted 18 October 2024

The use of ethanol as contrast enhancer in synchrotron X-ray phase-contrast imaging leads to heterogeneous myocardial tissue shrinkage: a case report

In this work, we show that the use of ethanol to increase image contrast when imaging cardiac tissue with synchrotron X-ray phase-contrast imaging leads to heterogeneous tissue shrinkage, which has an impact on the 3D organization of the myocardium.

Accepted 17 October 2024

Review and experimental comparison of speckle-tracking algorithms for X-ray phase contrast imaging

This review focuses on low-dose near-field X-ray speckle phase imaging in the differential mode introducing the existing algorithms with their specifications and comparing their performances under various experimental conditions.
IUCrJ
Accepted 14 November 2024

Incommensurately modulated structure of Zn4Si2O7(OH)2·H2O at high-pressure

Refinement of the hemimorphite crystal structure using single-crystal synchrotron X-ray diffraction data collected at high pressure revealed a structural phase transition into an incommensurately modulated structure, accompanied by the appearance of satellite reflections.

Accepted 13 November 2024

Structure of an ex vivo Drosophila TOM complex determined by single-particle cryoEM

A 3.3 Å resolution map and structural model of the TOM complex from Drosophila melanogaster were determined by single-particle cryoEM. The complex was extracted from native membranes of the fly retina following targeted expression of a Tom40 transgene.

Accepted 8 November 2024

Exploiting fourth-generation synchrotron radiation for enzyme and photoreceptor characterization

(Time-resolved) macromolecular crystallography at the new ID29 beamline at the ESRF is described.
Journal logoIUCrData
IUCrData

Accepted 18 November 2024

4-Amino-3,5-di­chloro­pyridine

The crystal structure of 4-amino-3,5-di­chloro­pyridine was determined by single-crystal X-ray diffraction technique and its mol­ecular inter­actions were investigated.

Accepted 18 November 2024

Tri­phenyl­phospho­nium tri­chlorido­(tri­phenyl­phosphane-κP)cobaltate(II) benzene disolvate

The central atom of the complex anion is coordinated by one tri­phenyl­phosphane and three chlorido ligands. The negative charge is balanced by a tri­phenyl­phospho­nium cation. Two benzene solvent mol­ecules are also present in the asymmetric unit.

Accepted 16 November 2024

Bis(azido-κN1)bis­(2,2′-di­pyridyl­amine-κ2N1,N1′)iron(II) monohydrate

Distortions of the octa­hedral {N6}-coordination of the FeII ion in the title complex Fe(dpa)2(N3)2 are described in terms of bond-length and angle variations alongside to the different kind of inter­molecular hydrogen bonds between the azide ions and the dpa ligands of the complex and the water mol­ecule of crystallization.


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