forthcoming articles

The following articles are a selection of those recently accepted for publication in IUCr journals.

Journal logoActa Crystallographica Section A
Acta Crystallographica
Section A
FOUNDATIONS AND ADVANCES
Accepted 13 December 2024

Symmetric 3-periodic polycatenanes: catenated rings, polyhedra and rods

We describe 3-periodic, vertex- and arc-transitive, polycatenated structures formed from rings, polyhedra and rods. There are infinite families of infinite structures, and this report is restricted to those structures with units linked to three or six others.

Accepted 12 December 2024

Crystallography of quasiperiodic moiré patterns in homophase twisted bilayers

The quasiperiodic nature of moiré patterns in homophase twisted bilayers is analyzed to understand the underlying basic periodicities and symmetries of homophase twisted bilayers built on any 2D structure.
Journal logoActa Crystallographica Section B
Acta Crystallographica
Section B
STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS

Accepted 2 January 2025

The chemical theory of valence


Accepted 30 December 2024

Crystallography of the litharge to massicot phase transformation from neutron powder diffraction data


Accepted 12 December 2024

Structural studies of hydrated rare earth nitrates within the stereoatomic model of crystal structures


Accepted 11 December 2024

High-pressure and low-tem­per­ature behaviour of organic ferroelectric (R)-3-quinuclidinol

Pressure-induced structural strain in (R)-3-quinuclidinol crystals is analysed over different pressure ranges[under pressure] and com­pared with structural strain on cooling.

Accepted 8 December 2024

Structural and theoretical studies of amantadinium fenamates


Accepted 1 December 2024

Photoelasticity of crystals with the scheelite structure: quantum mechanical calculations

The methodology proposed combines the DFT calculations and photoelasticity caused by uniaxial compression of the crystal lattice, with particular emphasis on its anisotropy. It can be considered as part of optical engineering aimed at preliminary assessment of the photoelastic properties of crystal materials, thus assisting in their selection for synthesis and relevant applications.

Accepted 28 November 2024

Crystal structure and doping in synthetic enstatite: an analysis of Li/Fe3+-doped single-crystal samples

Several Li+/Fe3+-doped Pbca orthoenstatite and Pbcn protoenstatite crystals were characterized revealing that varying levels of doping preferentially affect the py­rox­ene topologies.

Accepted 15 November 2024

Electron density distribution in bis­(guanidinium) disodium hypodiphosphate heptahydrate, (CH6N3)2Na2(P2O6)·7H2O

Electron density distribution in bis(guanidinium) disodium hypodiphosphate heptahydrate, (CH6N3)2Na2(P2O6)·7H2O, is reported.

Accepted 13 November 2024

Modulation of the modulated magnetic structure of an Ho i-MAX phase described by a magnetic (3+2)-dimensional superspace group

A rare complex incommensurate magnetic structure, an amplitude-modulated structure which itself is modulated, was determined in the Ho-based i-MAX phase (Mo2/3Ho1/3)2GaC. It represents a particularly distinctive case of a 2-k magnetic structure with no symmetry relation between the propagation vectors.

Accepted 13 November 2024

Crystallization induced by fungi and bacteria

The patterns of microbial crystallization are controlled by the chemical composition of biofilms associated with environmental exposure and the activity of microorganisms. The nutrition of microorganisms changes the oxalic acid and extracellular polymer substance content in the products of microbial metabolism, which significantly affects the medium pH promoting either the oxalate or carbonate crystallization.

more ...
Journal logoActa Crystallographica Section C
Acta Crystallographica
Section C
STRUCTURAL CHEMISTRY

Accepted 25 December 2024

Monoprotonated species of 2-amino­malonyl difluoride, [C3H4F2NO2][H2F3]

The monoprotonated species of 2-amino­malonyl difluoride, [C3H4F2NO2][H2F3], is particularly inter­esting for the protonation in superacidic media, as well as in Lewis acidic media, due to its two acyl fluoride moieties. The crystal structure is the first single-crystal X-ray diffraction measurement of this com­pound or its salts.

Accepted 20 December 2024

Fast event-based electron counting for small-mol­ecule structure determination by MicroED

Fast readout event-based electron counting (EBEC) is a promising detection strategy to determine accurate ab initio structures of beam-sensitive small mol­ecules by MicroED. A fast EBEC approach enhances the dynamic range of MicroED data by limiting the likelihood of coincidence loss (CL) – the undercounting of electrons due to their spatially and temporally unresolved arrival on a direct electron detector. As implemented by new counting detectors, fast EBEC allows structure-worthy data sets to be captured from individual small-mol­ecule crystals in under a minute.
Journal logoActa Crystallographica Section D
Acta Crystallographica
Section D
STRUCTURAL BIOLOGY

Accepted 28 December 2024

Structural characterization of the ACDC domain from ApiAP2 proteins, a potential molecular target against apicomplexan parasites

Crystal structures of ACDC domains derived from distinct Plasmodium ApiAP2 proteins reveal a conserved, unique noncanonical four-helix bundle architecture.
Journal logoActa Crystallographica Section E
Acta Crystallographica
Section E
CRYSTALLOGRAPHIC COMMUNICATIONS

Accepted 6 January 2025

Crystal structures of three salts of the tri­phenylsulfonium ion

The crystal structures of three salts of tri­phenyl­sulfonium ion are reported, namely, tri­phenyl­sulfonium triiodide (I), tri­phenyl­sulfonium perchorate (II), tri­phenyl­sulfonium hexa­fluoro­phosphate (III).

Accepted 5 January 2025

Synthesis, crystal structure and Hirshfeld surface analysis of 5,5-di­phenyl-2-[2-(propan-2-yl­idene)hydrazin-1-yl]-4,5-di­hydro-1H-imidazol-4-one N,N-di­methyl­formamide hemisolvate

The asymmetric unit consists of two independent mol­ecules of the substituted imidazolone having different conformations, and one mol­ecule of solvent DMF. The two imidazolone mol­ecules are linked by N—H⋯N and C—H⋯O hydrogen bonds and the DMF is joined to one of these by a N—H⋯O hydrogen bond. Additional N—H⋯N and C—H⋯O hydrogen bonds link these groups into corrugated layers parallel to the (101) plane with the layers joined by C—H⋯π (ring) inter­actions.

Accepted 20 December 2024

Crystal structure of poly[μ3-acetato-di­aqua-μ3-sulfato-cerium(III)]: serendipidous synthesis of a layered coordination polymer exhibiting inter­layer O—H⋯O hydrogen bonding

In the crystal structure of the title compound, the CeIII cations are ninefold coordinated and linked into chains via the acetate anions and are further connected into layers by the sulfate dianions.

Accepted 11 December 2024

(2,9-Di­methyl-1,10-phenanthroline)bis­[2-(pyridin-2-yl)phen­yl]iridium(III) hexa­fluoro­phosphate and (2,9-di­methyl-1,10-phenanthroline)bis­[5-methyl-2-(pyridin-2-yl)phen­yl]iridium(III) hexa­fluoro­phosphate–di­ethyl ether–aceto­nitrile (1/0.61/0.78)

The title compounds exhibit Ir—C and Ir—N bond lengths typical of cyclo­metallated iridium compounds with phenyl­pyridine ligands. Methyl­ation of the phenanthroline ligand leads to longer Ir—N bond lengths compared to the unmethyl­ated analog.
Journal logoActa Crystallographica Section F
Acta Crystallographica
Section F
STRUCTURAL BIOLOGY COMMUNICATIONS

Accepted 6 January 2025

CryoCrane: an open-source GUI for analyzing cryo-EM screening data sets

CryoCrane is a GUI which allows rapid analysis of cryo-EM screening data and supervision of data collections.

Accepted 4 January 2025

Serendipitous high-resolution structure of Escherichia coli carbonic anhydrase 2

Contaminating proteins from the expression source may inadvertently crystallize instead of the target protein of interest. Two novel crystal forms of E. coli carbonic anhydrase 2, as well as a high-resolution (1.43 Å) structure of the enzyme, are reported.

Accepted 3 January 2025

Crystallographic analysis of the Escherichia coli tRNA seleno-modification enzyme in complex with tRNA

tRNA 2-selenouridine synthase (SelU) produces a 5-substituted 2-selenouridine at the tRNA wobble position, which can fine-tune translation. Crystals of the SelU–tRNA complex were obtained and the initial structure was determined at 3.10 Å resolution.
Journal logoJournal of Applied Crystallography Journal of Applied
Crystallography

Accepted 29 December 2024

New robotic tools for multimodal non-destructive analysis and characterization of 2D and 3D objects

The forensic field requires versatile equipment for non-destructive characterization, analysis and inspection of 2D and 3D objects. The robotic scanner introduced here allows transmission X-ray imaging and mapping of individual photons with high-sensitivity and -resolution detectors. The broad capabilities of X-ray diffraction (XRD) imaging are now being complemented by X-ray fluorescence point analysis and mapping, multispectral macro imaging, and multispectral XRD analysis.

Accepted 17 December 2024

Integral X-ray diffuse scattering for studying irradiation-induced dislocation loops in single crystals

A computational and experimental investigation of integral X-ray diffuse scattering near Bragg reflections with a wide-open detector is presented for the case of small circular irradiation-induced dislocation loops in metals. The large wavevector asymptotic power-law falloff for such loops is determined computationally and incorporated into numerical and analytical integral X-ray diffuse scattering cross-section calculations. These calculations are shown to enable the experimental determination of the size distribution and concentrations of irradiation-induced dislocation loops in single-crystalline tungsten.

Accepted 11 December 2024

A comparison of microcrystal electron diffraction and X-ray powder diffraction for the structural analysis of metal–organic frameworks

Microcrystal electron diffraction (microED) was used to determine the crystal structure of a recently synthesized metal–organic framework (MOF) from powder crystallites. The structural descriptions of two other MOFs by microED are compared with results previously published using X-ray powder diffraction supported by density functional theory calculations.

Accepted 10 December 2024

crystchemlib, a Python library and GUI for analysis of crystal structure datasets

The proposed Python library and graphical user interface (GUI) provide an open-source solution for crystal chemical analysis of both user data and published datasets. A user-friendly GUI ensures availability of the basic library features for crystallographers without programming skills, whereas more advanced use is possible for those familiar with Python.

Accepted 10 December 2024

Measuring the Burgers vector of dislocations with dark-field X-ray microscopy

This work introduces the first direct comparison of contrast arising from dislocations using dark-field X-ray microscopy (DFXM) and the established method of transmission electron microscopy (TEM). We propose a method to directly measure the Burgers vector of a dislocation based on the symmetry with which DFXM scans across a rocking curve for a given diffraction peak.

Accepted 9 December 2024

Top dusted adhesive tape sample preparation method for the X-ray diffraction analysis of small powder sample volumes with the Bragg–Brentano setup

This work provides practical information on the conventional top dusted sample preparation method and the top dusted adhesive tape sample preparation method. For the top dusted adhesive tape method, tapes with matte acetate or polyvinyl chloride backing are recommended as they cause a comparatively low background signal without high-intensity reflections.

Accepted 7 December 2024

Bias caused by a popular weighting scheme


Accepted 5 December 2024

Simulation of bent Laue crystals for a high-energy X-ray monochromator with heat load consideration

To assess the performance of a double-crystal Laue-case monochromator, this study utilizes crystal simulation which integrates two diffraction profile calculation methods, two crystal depiction approaches and dual thermal distortion treatments. The thermal assessment effectively captures interior lattice plane distortions, enabling the simulation of crystal conditions closely matching actual scenarios.

Accepted 2 December 2024

hkl-based calculation of total scattering patterns from discrete and low-dimensional structure models using TOPAS

A demonstration is given of the use of discrete and low-dimensional structure models within the periodic formalism of conventional Rietveld refinement software for the calculation of total scattering patterns.

Accepted 18 November 2024

Studying novel high-pressure phases in laser-shock-affected silicon using poly: an algorithm for spot-wise phase identification

This article describes a new phase identification algorithm called poly intended for spotty selected-area electron diffraction patterns collected from polymorphic nanomaterials. We have developed this new approach to determine the predominant high-pressure phases produced in laser-shock-affected regions of silicon. In this study, applying this algorithm allowed us to reliably identify two new t32-Si and t32*-Si phases and indicate their relaxation time in other metastable high-pressure silicon phases.

more ...
Journal logoJournal of Synchrotron Radiation Journal of
Synchrotron Radiation

Accepted 16 December 2024

Probing Soft X-ray Induced Photoreduction of a Model Mn-Complex at Cryogenic Conditions

This controlled radiation damage study at different temperatures allows to refine approaches to measure radiation damage free/limited spectra from redox senstiive metalloenzymes and metal complexes in the soft X-ray regime at synchrotrons.

Accepted 13 December 2024

Compensation for the source drift of a free-electron laser beamline by adjusting the fixed-focus constant of the grating monochromator

A method for compensating for the source drift of a free-electron laser beamline by adjusting the Cff value of a grating monochromator is introduced.

Accepted 10 December 2024

Long-term timing stabilization for pump–probe experiments at SACLA

A timing control system to stabilize the long-term timing drift between X-ray free-electron laser (XFEL) and optical laser pulses has been developed by utilizing an out-of-loop balanced optical-microwave phase detector and an arrival-timing monitor. The timing jitter and drift between the XFEL and the optical laser pulses have been reduced to less than 50 fs (RMS) over ∼49 h.

Accepted 2 December 2024

ULtimate MAGnetic Characterization (ULMAG) at the ID12 beamline of ESRF: from element-specific properties to macroscopic functionalities


Accepted 2 December 2024

Local structure of solid and liquid gold probed by reverse Monte Carlo analysis of X-ray absorption data


Accepted 1 December 2024

Novel fixed-target serial crystallography flip-holder for macromolecular crystallography beamlines at synchrotron radiation sources

We present the development of a novel fixed-target flip-holder for synchrotron serial crystallography. This holder simplifies the sample handling process, reduces dehydration risks, and enables efficient crystallography experiments with minimal sample consumption, demonstrated through successful lysozyme crystal structure determination at room temperature.
IUCrJ
Accepted 3 January 2025

Understanding the selectivity of nonsteroidal anti-inflammatory drugs for cyclooxygenases using quantum crystallography and electrostatic interaction energy

This study employs quantum crystallography to elucidate the selectivity of NSAIDs, including ibuprofen, flurbiprofen, meloxicam, and celecoxib, for COX-1 and COX-2 enzymes by analyzing binding energy and electrostatic interactions. The findings reveal key structural determinants of NSAID selectivity, providing valuable insights for the rational design of safer and more effective anti-inflammatory drugs.

Accepted 28 December 2024

Single-shot X-ray imaging of two-dimensional strain fields in colloidal crystals

We used the Bragg coherence diffraction imaging (BCDI) method at the Coherent Scattering and Imaging (CSI) endstation of the Shanghai Soft X-ray Free Electron Laser Facility (SXFEL) to characterize colloidal crystals. This method was successfully reproduced the static shape of crystals and observed the defect structure of colloidal samples.

Accepted 18 December 2024

Novel starting points for fragment-based drug design against human heat-shock protein 90 identified using crystallographic fragment screening

This is the first instance completed by the crystallographic fragment-screening platform of the Shanghai Synchrotron Radiation Facility (SSRF) in China. 800 fragments were screened and 91 compounds were identified to bind at eight different sites.

Accepted 13 December 2024

Accounting for electron beam-induced warping of molecular nanocrystals in MicroED structure determination

Here we identify and characterize the warping of molecular crystal lattices induced by electron beam exposure during microcrystal electron diffraction (MicroED/3DED) data collection. We find changes to consensus crystal lattice orientation that are often dramatic, and appear ubiquitous in small organic molecule crystals. This evidence highlights the relevance of crystal bending or warping as a consequence of radiation-induced damage on molecular specimens, and points to it as a fundamental source of error in MicroED/3DED data collection and structure determination.

Accepted 12 December 2024

Experimental electronic structure of copper complexes with bi­phenyldi­imino di­thio­ether – model of blue copper proteins

Differences in the electronic structures of Cu(I) and Cu(II) coordination compounds with the same ligand as the model structures of `blue copper proteins' were studied.

Accepted 3 December 2024

A new statistical metric for robust target detection in cryo-EM using 2D template matching

A novel statistical metric for 2D template matching (2DTM), the 2DTM p-value, has been developed to improve the detection of targets in cryo-EM images under various imaging and sample conditions, particularly for smaller and aspherical targets.
Journal logoIUCrData
IUCrData


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