forthcoming articles

The following articles are a selection of those recently accepted for publication in IUCr journals.

Journal logoActa Crystallographica Section A
Acta Crystallographica
Section A
FOUNDATIONS AND ADVANCES
Accepted 15 April 2024

Universal simulation of absorption effects for X-ray diffraction in reflection geometry

A ray-tracing algorithm for the simulation of absorption effects for arbitrary rasterized samples is presented. The algorithm is used to analyze how the absorption correction is influenced by the lateral and vertical dimensions of the material distribution in a sample surface.

Accepted 26 March 2024

Development of an innovative diffraction scattering theory of X-rays and electrons in imperfect crystals

The Liouville–Neumann-type series formalism is applied to solve the X-ray and electron boundary-value Cauchy problems formulated in the form of the matrix Volterra integral equation of the second kind. Using the two-stage resolvent solution of the second order, this approach is supported by straightforward calculation of the electron bright- and dark-field contrasts of the edge dislocation in a thick foil.
Journal logoActa Crystallographica Section B
Acta Crystallographica
Section B
STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS

Accepted 13 May 2024

Magnetic structures in R5Pt2In4 (R = Tb–Tm) investigated by neutron powder diffraction

Magnetic structures in R5Pt2In4 (R = Tb–Tm) are determined from neutron powder diffraction.

Accepted 3 May 2024

Multiscale structure of LaAlO3 from single crystal X-ray diffraction

Multiscale structure including macroscopic domain ratios and atomic scale structures of LaAlO3 perovskite oxide have been determined by synchrotron radiation single crystal X-ray diffraction.

Accepted 1 May 2024

Ring formation of transition metal trichalcogenides TaSe3 using vapor liquid process

Results demonstrate successful growth of continuous, edgeless ring-shaped crystals of TaSe3 from the liquid phase.

Accepted 17 April 2024

Current developments and trends in quantum crystallography

Recent methodological developments and their applications in quantum crystallography are reviewed, with an overlook[eye/] towards [perspective on] near-future advancements in this research field.

Accepted 9 February 2024

Polymorph sampling with coupling to extended variables: enhanced sampling of polymorph energy landscapes and free energy perturbation of polymorph ensembles

A design is tested for a polymorph search algorithm relevant for enhanced sampling of crystal structures based on the relation between internal molecular structure variables and corresponding crystal polymorphs as representative of the inherent vapor to crystal transitions that exist in nature. Molecules are represented as extended variables within a thermal reservoir. Unit-cell variables are generated using pseudo-random sampling incorporating a harmonic coupling to extended variables.
Journal logoActa Crystallographica Section C
Acta Crystallographica
Section C
STRUCTURAL CHEMISTRY

Accepted 20 May 2024

Preferential crystallization of (±)-pinenyllithium·TMEDA

β-Pinene is remarkably more reactive toward butyl­lithium·TMEDA than α-pinene, rapidly yielding the allyl­lithium·TMEDA complex, which preferentially crystallizes in the racemic form even from 92% ee solutions. Pinenyllithium·TMEDA is monomeric, with structural features that avoid both the Li–[(all­yl)–Li]n– and Li–[π–Li]n–π– modes of aggregation common to allyl­lithiums.

Accepted 7 May 2024

Formation of extended polyiodides at large cation templates

Analysis of the structures of [Pd2I2([18]aneN2S4)](I)2·(I2)5 and [H2([2.2.2]cryptand)](I3)(I)(I2)2.5·CH2Cl2 identify some of the factors responsible for the structural features of extended polyiodides.
Journal logoActa Crystallographica Section D
Acta Crystallographica
Section D
STRUCTURAL BIOLOGY

Accepted 23 May 2024

Introduction of Capsules environment to support further growth of the SBGrid structural biology software collection

The integration of Capsules within the SBGrid software management platform marks a pivotal advancement in addressing the challenges of scientific software distribution, dependency management and computational reproducibility.

Accepted 15 May 2024

Pillar data-acquisition strategies for cryo-electron tomography of beam-sensitive biological samples

An n-helix tilt scheme for cryo-electron tomography of pillar-shaped samples is described and simulated, allowing the entire pillar volume to be reconstructed as a single unit. Three related tilt schemes to enable the collection of the most isotropic information across all spatial frequencies are also evaluated.

Accepted 13 May 2024

High-confidence placement of low-occupancy fragments into electron density using the anomalous signal of sulfur and halogen atoms

Anomalous scattering and PanDDA were employed to determine the binding orientation(s) of novel planar and low-occupancy fragment hits containing sulfur and/or halogen atoms that bind to SARS-CoV-2 nsp1. This approach was validated for these challenging-to-fit fragments with an anomalous data-collection strategy designed to mitigate radiation-damage effects, which are known to particularly affect halogenated fragments due to their higher X-ray absorption cross sections.

Accepted 2 May 2024

Crystal-packing analysis of translation initiation factor 2 reveals new details of its function

A comparative analysis of the known crystal structures of the archaeal translation initiation factor 2 from Sulfolobus solfataricus and its individual subunits is reported. This work confirms the leading role of switch 1 in the function of the γ subunit of translation initiation factor 2 and reveals some important new details of this process.
Journal logoActa Crystallographica Section E
Acta Crystallographica
Section E
CRYSTALLOGRAPHIC COMMUNICATIONS

Accepted 29 May 2024

Syntheses and crystal structures of the five- and sixfold coordinated complexes diiso­seleno­cyanato­tris­(2-methyl­pyridine N-oxide)cobalt(II) and diiso­seleno­cyanato­tetra­kis­(2-methyl­pyridine N-oxide)cobalt(II)

The crystal structures of the title compounds, which arose from the same reaction, consist of discrete complexes in which the cobalt cations are either in a CoN2O3 trigonal–bipyramidal or a CoN2O4 octa­hedral coordination.

Accepted 28 May 2024

Crystal structure of Staudtienic acid, a diterpenoid from Staudtia kamerunensis Warb. (Myristicaceae)

This work presents the crystal structure of a natural diterpenoid, Staudtienic acid, isolated from the stem bark of Staudtia kamerunensis Warb (Myristicaceae). This work confirmed the results previously obtained from NOE spectroscopy.

Accepted 27 May 2024

The crystal structures and Hirshfeld surface analysis of three new bromo-substituted 3-methyl-1-(phenyl­sulfon­yl)-1H-indole derivatives

The crystal structures of three new indole derivative are described. The supra­molecular relations in the system were assessed with a Hirshfeld surface analysis and calculation of the inter­action energies, which suggest a primary significance of π–π and C—H⋯π inter­actions involving the indole moieties.

Accepted 23 May 2024

Synthesis and crystal structure of the cluster (Et4N)[(Tp*)MoFe3S33-NSiMe3)(N3)3]

This type of heterometallic and heteroleptic single cubane cluster represents a typical example within the Mo–Fe–S cluster family, which may be a good reference for understanding the structure and function of the nitro­genase FeMo cofactor.

Accepted 22 May 2024

Structural characterization of the supra­molecular complex between a tetra­quinoxaline-based cavitand and benzo­nitrile

The 2:1 supra­molecular complex between a tetra­quinoxaline-based cavitand and benzo­nitrile as a guest has been studied through X-ray diffraction analysis. One of the benzo­nitrile mol­ecules in engulfed inside the macrocycle.

Accepted 21 May 2024

Synthesis and structural characterization of a hydrated sodium–caesium tetra­cosa­tungstate(VI), Na5Cs19[W24O84]·21H2O

The isopolytungstate(VI) [W24O84]24– anion in the hydrated mixed-alkali isopolytungstate exhibits mol­ecular C3i symmetry.

Accepted 21 May 2024

Crystal structure of 1-(1,3-benzo­thia­zol-2-yl)-3-(4-bromo­benzo­yl)thio­urea

A thio­urea derivative with two dissimilar functional groups was prepared and characterized. In the crystal, pairs of adjacent mol­ecules inter­act via inter­molecular hydrogen bonds of type C—H⋯N, C—H⋯S and N—H⋯S, resulting in mol­ecular layers parallel to the ac plane.

Accepted 20 May 2024

Ethyl 2-[(2-oxo-2H-chromen-6-yl)­oxy]acetate

Ethyl 2-[(2-oxo-2H-chromen-6-yl)­oxy]acetate, a coumarin derivative, crystallizes in sheets, within which mol­ecules are held by weak C—H⋯O hydrogen-bonding inter­actions and between which mol­ecules inter­act by π–π stacking and additional C—H⋯O weak hydrogen bonds between ethyl acet­oxy groups.

Accepted 6 May 2024

Structural multiplicity in a multi-component solvated crystal of the anti­retroviral protease inhibitor Lopinavir

The multi-component solvated Lopinavir crystal was prepared using evaporative methods. The crystal structure is unusual in that although Lopinavir was crystallized in ethyl­ene glycol (ethane-1,2-diol) alone, the unit cell contains four different components, totalling 18 mol­ecules. The stoichiometric ratio of this crystal is eight lopinavir mol­ecules, two ethane-1,2-diol mol­ecules, one (E)-ethene-1,2-diol (C2H4O2) and seven water mol­ecules.
Journal logoActa Crystallographica Section F
Acta Crystallographica
Section F
STRUCTURAL BIOLOGY COMMUNICATIONS

Accepted 19 May 2024

Cryo-EM structure and functional analysis of the chromatin remodeler RSF

RSF1 changes the chromatin-remodeling mode of SNF2h. The RSF complex does not have a nucleosome-recentering capacity and a `critical distance' exists during the action of RSF in vitro; this distance is about 24 base pairs. The RSF complex loosens parts of the nucleosome DNA and undergoes conformational change on linker DNA stimulation.
Journal logoJournal of Applied Crystallography Journal of Applied
Crystallography

Accepted 13 May 2024

Demonstration of neutron time-of-flight diffraction with an event-mode imaging detector

This paper demonstrates for the first time an event-mode imaging based neutron diffraction detector system that employs a scintillator screen, an image intensifier, and a Timepix3 based camera. This highly configurable approach allows for large solid angle, low cost neutron diffraction setups and this work shows that the performance is comparable to the 3He detectors on a time-of-flight neutron diffraction beamline. Rietveld analysis for this type of data was enabled by implementing data reduction in the MAUD Rietveld code.

Accepted 9 May 2024

A simple protocol for determining the zone axis direction from selected area electron diffraction spot patterns of cubic materials

Re-examination of the long-known Rn ratio method for indexing electron diffraction zone axis patterns of materials with cubic symmetry has revealed some unrecognized potential for lattice direction analysis and, in some cases, unambiguous identification of the Bravais lattice. A protocol has been developed which allows the identification of experimental spot patterns for the 15 most common lattice directions.

Accepted 9 May 2024

Updating Direct Methods II. Reduction of the structural complexity when triplet invariants are estimated via the Patterson map

A recently published probabilistic theory estimates triplet invariants by using the Patterson peaks as prior information. This paper is the first experimental test: we showed that the new estimates are so accurate that may be applied to macromolecules. Structural complexity and atomic data resolution are no more critical limits.

Accepted 8 May 2024

A science-driven approach to optimize the design for a biological small-angle neutron scattering instrument

This work presents a time-of-flight small-angle neutron scattering instrument concept based on an optimization workflow using McStas simulations to explore the parameter space with a focus on instrument performance for a given scientific objective.

Accepted 7 May 2024

RMCProfile7: Reverse Monte Carlo for multiphase systems

This paper presents the new RMCProfile7 program for Reverse Monte Carlo big box modelling of multiple phase systems.

Accepted 7 May 2024

Patching-based deep-learning model for the inpainting of Bragg coherent diffraction patterns affected by detector gaps


Accepted 6 May 2024

Automated pipeline processing X-ray diffraction data from dynamic compression experiments on the Extreme Conditions Beamline of PETRA III

The implementation is described of tools for rapid X-ray diffraction data processing and analysis for dynamic compression experiments using a diamond anvil cell.

Accepted 6 May 2024

Observation of quasi-Bragg scattering by Goebel mirrors

This paper reports the first observation of quasi-Bragg scattering from collimating Goebel mirrors in a real instrument.

Accepted 6 May 2024

Qu­antitative selection of sample structures in small-angle scattering using Bayesian methods

We propose a Bayesian method for quantitatively selecting a mathematical model of a sample for small-angle scattering, and evaluate its performance through numerical experiments on artificial data of a sample containing a mixture of multiple spherical particles.

Accepted 1 May 2024

A study of stress, composition and grain interaction gradients in energy-dispersive X-ray stress analysis on materials with cubic symmetry

The influence of various combinations of residual stress, composition and grain interaction gradients in polycrystalline materials with cubic symmetry on X-ray stress analysis by energy-dispersive diffraction is discussed on the basis of simulations for ferritic and austenitic steel.

more ...
Journal logoJournal of Synchrotron Radiation Journal of
Synchrotron Radiation

Accepted 29 May 2024

High angular sensitivity X-ray phase-contrast microtomography of soft-tissue through a two-directional beam-tracking synchrotron set-up




Accepted 29 April 2024

Signal-to-noise and spatial resolution in in-line imaging. 1. Basic theory, numerical simulations and planar experimental images

Signal-to-noise ratio and spatial resolution are quantitatively analysed in the context of propagation based X-ray phase-contrast imaging. The performance of the method is shown to be determined by the Fresnel number and the ratio of the real decrement to the imaginary part of the refractive index of the imaged object.

Accepted 29 April 2024

Roentgenoscopy of laser-induced projectile impact testing

Laser-induced projectile impact testing (LIPIT) based on X-ray white-light imaging is presented. This study confirms the potential of LIPIT based on synchrotron in situ imaging, which allows the recording of the trajectories of high-speed particles inside a material and the material's impact response in real time.

Accepted 29 April 2024

The effect of transport apertures on relay-imaged, sharp-edged laser profiles in photoinjectors and the impact on electron beam properties

Wavefront propagation studies show that apertures in the laser injection path into photoinjector electron guns result in spatial ripples in relay-imaged cut-Gaussian profiles. The effect on electron beam properties depends on the extent to which space charge washes out the corresponding ripples in the emitted electron bunch, but could significantly negatively impact on the quality of the electron bunch.

Accepted 28 April 2024

The HEPS Synchrotron unleashes new medical frontiers

The High Energy Photon Source (HEPS) in Beijing achieved a beam energy of 6GeV, positioning it as the world's brightest fourth-generation synchrotron with the smallest emittance. This milestone enables groundbreaking advances in health sciences and various research fields, promising new insights into biological and quantum processes.

Accepted 26 April 2024

Automated spectrometer alignment via machine learning

In this study, we showcase the application of a machine learning approach for the automated alignment of a soft X-ray spectrometer. Our method has been validated with experimental data at the beamline and significantly reduces the alignment time from approximately one hour to just a few minutes.

Accepted 25 April 2024

Dual-beam X-ray nano-holotomography

First implementation of full-field nano-holotomography in a dual beam configuration.

Accepted 22 April 2024

Soft X-ray wavefront sensing at an ellipsoidal mirror shell

Phase retrieval at an axisymmetric ellipsoidal mirror is demonstrated with soft X-rays (277 eV), completed by a reconstruction of the focus as well as figure and alignment error of the mirror. Based on simple measurements of the cross-focal, three-dimensional intensity distribution, an intuitive algorithm is proposed which combines the advantages of high resolution, sensitivity and reliability even under difficult conditions like a low source flux or weak spatial coherence.

more ...IUCrJ
Accepted 23 May 2024

Statistical optimization of guest uptake in crystalline sponges: grading structural outcomes

A statistical design of experiments approach applied to crystalline sponge analysis enables greater understanding of experimental influences and the development of a novel molecular structure quality grading system.

Accepted 16 May 2024

Structural insight into piezo-solvatochromism of Reichardt's dye

This work employs the preference of compounds to crystallize at high-pressure in the form of solvates to explore the solvation process and piezo-solvatochromic effects of Reichardt's dye, ET(1). Its solute–solvent interactions affect the optical properties of the dye in various solvents as shown by X-ray diffraction and UV–Vis spectroscopy, revealing applications in nonlinear optoelectronics and molecular pressure sensor development.

Accepted 30 April 2024

Crystal structure via fluctuation scattering

Fluctuation X-ray scattering measures the correlation of scattered X-rays in diffraction experiments. Here, the Bragg peak intensity from fluctuation X-ray scattering correlations is recovered using an iterative algorithm.

Accepted 26 April 2024

Scanning WAXS microscopy of regenerated cellulose fibers at mesoscopic resolution

Scanning WAXS microscopy of a regenerated cellulose textile fiber reveals a radial gradient in the degree of orientation of the crystallite.

Accepted 22 April 2024

Chromic soft crystals based on luminescent platinum(II) complexes

Platinum(II) complexes exhibit intense luminescence based on their molecular arrangement and chromic luminescence, which is a color change in response to gentle stimuli such as vapor exposure or weak mechanical forces. Both the molecular and the crystal designs for soft crystals are critical to effectively control the chromic phenomenon of platinum(II) complexes.
Journal logoIUCrData
IUCrData

Accepted 28 May 2024

(4-Butyl-1-ethyl-1,2,4-triazol-5-yl­idene)[(1,2,5,6-η)-cyclo­octa-1,5-diene](tri­phenyl­phosphane)iridium(I) tetra­fluorido­borate

The title triazole-based N-heterocyclic carbene iridium(I) cationic complex with a tetra­fluorido­borate counter-anion, crystallizes with two cations and two anions in the asymmetric unit. In the extended structure, non-classical C–H⋯F hydrogen bonds, one of which is notably short (H⋯F = 2.21 Å), link the cations and anions.

Accepted 27 May 2024

(2,5-Di­methyl­imidazole){N,N′,N′′,N′′′-[porphyrin-5,10,15,20-tetra­yltetra­(2,1-phenyl­ene)]tetra­kis(pyridine-3-carboxamide)}manganese(II) chloro­benzene disolvate

In the title compound, the central MnII ion is coordinated by four pyrrole N atoms of the porphyrin core in the basal sites and one N atom of the 2,5-di­methyl­imidazole ligand in the apical site. Two chloro­benzene solvent mol­ecules are also present in the asymmetric unit.

Accepted 27 May 2024

Chlorido­[5,10,15,20-tetra­kis­(quinoline-7-carboxamido)­porphinato]iron(III)

The porphyrin macrocycle shows a characteristic ruffled-shape distortion. The central FeIII cation (site symmetry 2) is coordinated in a fivefold manner, with four pyrrole N atoms of the porphyrin core in the basal sites and one Cl atom (site symmetry 2) in the apical position.

Accepted 25 May 2024

2-Oxo-2H-chromen-4-yl 3,3-di­methyl­butano­ate

In the crystal of the title compound, the mol­ecules are connected through C—H⋯O hydrogen bonds, generating [100] chains, which are crosslinked by weak π–π stacking inter­actions.

Accepted 24 May 2024

Poly[[{μ2-5-[(di­methyl­amino)(thioxo)meth­oxy]benzene-1,3-di­carboxyl­ato-κ4O1,O1′:O3,O3′}(μ2-4,4′-di­pyridyl­amine-κ2N4:N4′)cobalt(II)] di­methyl­formamide hemisolvate monohydrate]

The crystal structure of the title compound shows a layered arrangement parallel to the bc plane where [CoO4N2] octa­hedra are linked by dmtb2– and dpa ligands.

Accepted 23 May 2024

Ilmenite-type Na2(Fe2/3Te4/3)O6

Na2(Fe2/3Te4/3)O6 was obtained under hydro­thermal conditions and adopts the ilmenite (FeTiO3) structure type.

Accepted 22 May 2024

Tetra­kis(2,4,6-tri­methyl­anilido)tin(IV)

The mol­ecular structure of Sn(NHMes)4 is defined by a central tin(IV) atom that is coordinated by four NHMes groups in a distorted tetra­hedral arrangement.

Accepted 22 May 2024

(S)-2-Carb­oxy­ethyl L-cysteinyl sulfone

The mol­ecule is a zwitterion, with a protonated α-amino group and a deprotonated α-carboxyl group. Within the crystal, the mol­ecules are linked by a system of hydrogen bonds formed by both the protonated and deprotonated carb­oxy­lic groups, and the protonated ammonium group.

Accepted 21 May 2024

2-(10-Bromo­anthracen-9-yl)-N-phenyl­aniline

The N—H group of the title compound does not form a hydrogen bond due to steric hindrance.

Accepted 18 May 2024

Octa­kis(di­butyl­ammonium) deca­molybdate(VI)

(C8H20N)8[Mo10O34] comprises a centrosymmetric deca­molybdate polyanion linked through N—H⋯O hydrogen bonds to di­butyl­ammonium counter-cations.

more ...

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